Tuesday, May 26, 2009

g03 oops

Duh! I need to add this into /etc/sysctl.conf and run the sysctl command on every cluster node.
# for g03
kernel.randomize_va_space = 0
(skipped, the commands are easy part, the hard part is to recover this from my own rusty brain.

The profile file, beware of that if /usr/tmp is not working and gives you shits like "Erroneous write during file extend. write -1 instead of 4096", check the writability permission on $GAUSS_SCRDIR. Or just set GAUSS_SCRDIR to $HOME.
export PATH="/home/software/g03/g03:${PATH}"
export LD_LIBRARY_PATH="${LD_LIBRARY_PATH}:/home/software/g03/g03:/home/software/g03/gv/lib"
export g03root="/home/software/g03/g03"
export GAUSS_EXEDIR="/home/software/g03/g03"
export GAUSS_SCRDIR="/usr/tmp"
export G03BASIS="/home/software/g03/g03/basis/"
export GAUSS_ARCHDIR="/home/software/g03/g03/arch"
export GV_DIR="/home/software/g03/gv"
alias gv=$GV_DIR'/gview'
alias gview=$GV_DIR'/gview'

My installation on the cluster:
$ find /home/software/g03 -type d
/home/software/g03
/home/software/g03/g03
/home/software/g03/g03/arch
/home/software/g03/g03/basis
/home/software/g03/g03/bsd
/home/software/g03/g03/tests
/home/software/g03/g03/tests/com
/home/software/g03/g03/tests/i386
/home/software/g03/g03/tests/rs6k
/home/software/g03/gv
/home/software/g03/gv/bin
/home/software/g03/gv/data
/home/software/g03/gv/data/biofrags
/home/software/g03/gv/data/biofrags/fragments
/home/software/g03/gv/data/elements
/home/software/g03/gv/data/elements/bitmaps
/home/software/g03/gv/data/elements/fragments
/home/software/g03/gv/data/fonts
/home/software/g03/gv/data/rgroups
/home/software/g03/gv/data/rgroups/bitmaps
/home/software/g03/gv/data/rgroups/fragments
/home/software/g03/gv/data/rings
/home/software/g03/gv/data/rings/bitmaps
/home/software/g03/gv/data/rings/fragments
/home/software/g03/gv/help
/home/software/g03/gv/help/icons
/home/software/g03/gv/help/pix
/home/software/g03/gv/help/refs
/home/software/g03/gv/lib

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